PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00066271001
Common NameGSBRNA2T00066271001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 241aa    MW: 26067.4 Da    PI: 8.1633
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00066271001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.93.3e-284105194
               DUF260   1 aCaaCkvlrrkCakdCvlapyf........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 
                          +C++C+vlr++C++dC+++p++         ++ ++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg++++
  GSBRNA2T00066271001   4 SCNGCRVLRKGCNQDCTIRPCLqwiksadsQHAAANATLFLAKFYGRAGLLNLIESGPNHLRPAIFRSLLYEACGRIVNPVDGSVGLMWS 93 
                          6*********************9999865444446999**************************************************** PP

               DUF260  83 lqqqleqlkael 94 
                          +++  +q+++++
  GSBRNA2T00066271001  94 GNWSQCQAAVDA 105
                          *******99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.3123112IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-224104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQHAAANA TLFLAKFYGR AGLLNLIESG  60
PNHLRPAIFR SLLYEACGRI VNPVDGSVGL MWSGNWSQCQ AAVDAILNGL PITHTPLASA  120
SASHQIIPPH RTYDIRHVAK DPTTGGDSSE SLALAPRVNG NKAKTKTGRL KRLAETVDFQ  180
LGECSHDTWQ LQCSGATHGY GQLALENVEN RREAPLNQSS NLGRDDQVDT NEVGLELRLG  240
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.14962e-99seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00066271001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013591058.11e-175PREDICTED: LOB domain-containing protein 42
RefseqXP_013702892.11e-175PREDICTED: LOB domain-containing protein 42
RefseqXP_013702916.11e-175PREDICTED: LOB domain-containing protein 42
SwissprotQ9CA301e-150LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A078HP881e-180A0A078HP88_BRANA; BnaC06g30110D protein
STRINGBra004315.1-P1e-167(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84632639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-151LOB domain-containing protein 42
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]